PDBsum entry 1rnf Go to PDB code:  Tunnel analysis for: 1rnf calculated with MOLE 2.0 PDB id 1rnf Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.13 1.14 26.4 0.43 0.19 16.0 91 1 2 1 6 0 0 1   2 1.20 3.18 27.1 1.25 0.35 7.7 85 2 1 0 6 2 1 0   3 1.20 1.38 28.5 1.11 0.33 8.1 84 2 1 0 5 1 1 1   4 1.13 1.14 30.4 0.26 0.02 17.0 88 1 3 1 7 1 1 0   5 1.20 3.18 41.7 0.18 0.12 13.5 94 3 1 3 7 2 0 0   6 1.21 1.41 43.1 -0.05 0.06 14.3 93 3 1 3 6 1 0 1   7 1.50 1.94 16.4 -1.34 -0.49 16.0 90 3 1 2 3 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.