 |
PDBsum entry 1rkw
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 1rkw calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1rkw
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
13 pores,
coloured by radius |
|
9 pores,
coloured by radius
|
9 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.10 |
2.33 |
27.5 |
-1.81 |
0.14 |
10.2 |
72 |
|
1 |
4 |
4 |
0 |
6 |
0 |
0 |
|
PNT 225 A
|
 |
|
2 |
 |
1.20 |
3.36 |
34.7 |
-2.18 |
-0.49 |
17.8 |
82 |
2 |
3 |
5 |
2 |
2 |
0 |
0 |
|
|
3 |
 |
1.25 |
1.41 |
55.9 |
-0.14 |
0.25 |
9.7 |
79 |
3 |
3 |
6 |
9 |
7 |
0 |
0 |
PNT 225 A
|
|
4 |
 |
1.25 |
1.41 |
62.8 |
0.17 |
0.27 |
8.4 |
80 |
3 |
4 |
7 |
8 |
7 |
0 |
0 |
|
|
5 |
 |
1.20 |
3.23 |
63.5 |
-0.49 |
0.01 |
12.9 |
87 |
5 |
4 |
8 |
6 |
4 |
0 |
0 |
SO4 279 A
|
|
6 |
 |
2.71 |
5.44 |
69.9 |
-1.52 |
-0.24 |
20.6 |
84 |
9 |
3 |
3 |
4 |
2 |
0 |
0 |
SO4 279 A SO4 399 A SO4 499 D SO4 799 D
|
|
7 |
 |
1.20 |
3.38 |
77.2 |
-0.41 |
0.05 |
12.1 |
81 |
3 |
5 |
8 |
10 |
6 |
0 |
0 |
|
|
8 |
 |
1.09 |
3.17 |
79.5 |
-0.34 |
-0.05 |
11.7 |
88 |
6 |
3 |
6 |
4 |
4 |
0 |
0 |
SO4 279 A SO4 499 D SO4 799 D
|
 |
9 |
 |
1.27 |
2.04 |
110.8 |
-0.84 |
-0.04 |
16.3 |
80 |
7 |
8 |
8 |
11 |
5 |
0 |
0 |
SO4 299 B
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program