PDBsum entry 1rj2 Go to PDB code:  Tunnel analysis for: 1rj2 calculated with MOLE 2.0 PDB id 1rj2 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.30 1.44 37.2 0.27 0.29 10.5 81 3 2 3 5 4 0 0   2 1.32 1.42 45.1 -0.83 0.07 20.4 81 6 3 3 7 4 1 0   3 1.31 1.42 47.8 -0.49 0.17 13.1 77 4 1 3 5 4 1 0   4 1.84 1.87 22.0 1.81 0.74 1.2 59 0 0 2 5 3 0 2   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.