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PDBsum entry 1rfu

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 1rfu calculated with MOLE 2.0 PDB id
1rfu
Pores calculated on whole structure Pores calculated excluding ligands

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9 pores, coloured by radius 10 pores, coloured by radius 10 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.40 1.40 87.3 -1.36 -0.41 20.9 81 7 8 5 6 0 2 0  
2 1.73 1.84 117.3 -0.71 -0.20 17.2 80 12 7 5 9 3 1 0  ADP 3402 D
3 1.71 1.77 117.5 -1.37 -0.39 18.0 82 11 8 8 7 1 3 0  
4 1.40 1.39 133.4 -0.58 -0.24 14.3 80 12 6 7 12 3 3 0  ADP 3402 D
5 1.55 1.72 130.2 -0.52 -0.14 15.1 84 9 5 6 7 2 2 0  ADP 3402 D
6 1.77 1.82 137.2 -1.83 -0.43 22.6 84 12 12 13 7 1 2 0  
7 2.83 3.14 155.4 -1.86 -0.50 22.2 82 10 8 9 5 1 3 0  
8 1.74 1.82 161.7 -0.63 -0.23 13.0 81 15 6 12 12 4 4 0  ADP 3402 D
9 1.41 1.41 163.4 -1.27 -0.43 16.6 83 10 7 11 7 1 4 0  
10 1.81 1.83 193.6 -1.32 -0.43 15.7 83 14 7 14 8 2 5 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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