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PDBsum entry 1rae
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Tunnel analysis for: 1rae calculated with  MOLE 2.0
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PDB id
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1rae
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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14 tunnels,
coloured by tunnel radius |
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10 tunnels,
coloured by
tunnel radius
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10 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.03 |
2.08 |
15.5 |
-2.62 |
-0.36 |
19.2 |
84 |
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3 |
2 |
4 |
1 |
1 |
0 |
0 |
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2 |
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1.50 |
1.54 |
16.0 |
-2.02 |
-0.23 |
19.7 |
85 |
3 |
0 |
4 |
0 |
2 |
0 |
0 |
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3 |
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1.19 |
2.56 |
18.8 |
-0.65 |
-0.25 |
21.6 |
79 |
2 |
3 |
0 |
5 |
0 |
0 |
0 |
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4 |
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1.50 |
2.52 |
28.1 |
-0.43 |
-0.28 |
16.3 |
80 |
4 |
4 |
1 |
7 |
0 |
0 |
0 |
CTP 999 D
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5 |
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1.24 |
1.49 |
21.2 |
1.50 |
0.54 |
1.3 |
78 |
0 |
0 |
3 |
7 |
1 |
1 |
0 |
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6 |
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1.28 |
3.13 |
21.3 |
2.33 |
0.73 |
0.7 |
76 |
0 |
0 |
2 |
8 |
1 |
1 |
0 |
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7 |
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1.36 |
2.57 |
17.4 |
0.86 |
0.23 |
5.8 |
74 |
1 |
1 |
0 |
5 |
1 |
1 |
0 |
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8 |
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1.19 |
2.90 |
47.3 |
0.40 |
0.09 |
3.3 |
82 |
1 |
0 |
5 |
7 |
2 |
1 |
0 |
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9 |
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1.31 |
1.39 |
16.8 |
0.43 |
0.20 |
4.0 |
84 |
0 |
1 |
1 |
5 |
2 |
0 |
0 |
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10 |
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1.30 |
1.38 |
19.6 |
1.09 |
0.31 |
9.2 |
82 |
0 |
2 |
2 |
5 |
1 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program