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PDBsum entry 1qzh

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 1qzh calculated with MOLE 2.0 PDB id
1qzh
Pores calculated on whole structure Pores calculated excluding ligands

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8 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.56 2.13 30.3 -1.92 -0.54 24.6 80 2 4 4 3 1 0 0  DC 6 G DC 6 I
2 3.22 3.50 33.0 -2.22 -0.87 6.9 75 1 1 8 1 1 0 0  
3 3.23 3.60 34.8 -1.72 -0.39 8.3 72 1 2 5 3 2 1 0  
4 2.28 2.28 38.2 -2.75 -0.72 29.7 84 4 2 3 1 0 0 0  DG 1 I DG 2 I
5 2.61 3.93 46.4 -1.58 -0.54 4.5 78 0 1 8 2 1 3 0  
6 2.31 3.57 50.0 -2.09 -0.56 27.5 83 6 4 5 3 0 0 0  DG 1 I DG 2 I
7 2.60 3.91 51.7 -1.07 -0.18 4.2 75 0 2 6 4 2 4 0  
8 2.28 2.28 53.9 -1.97 -0.33 17.2 79 3 2 5 2 1 2 0  DG 1 I DG 2 I

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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