PDBsum entry 1qyh Go to PDB code:  Tunnel analysis for: 1qyh calculated with MOLE 2.0 PDB id 1qyh Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.22 22.8 -0.01 -0.03 13.3 88 2 2 2 4 1 0 0   2 1.22 1.23 24.8 0.09 0.31 9.7 82 3 1 3 4 2 0 0   3 1.22 1.24 26.1 -0.76 -0.16 12.6 88 2 1 4 5 1 0 0   4 1.22 1.22 31.5 -0.79 0.09 19.6 82 3 3 3 5 2 0 0   5 1.22 1.23 36.3 -0.95 0.04 21.1 84 5 1 3 6 1 0 0   6 1.45 1.45 22.6 -0.85 -0.23 16.1 94 2 2 2 6 0 0 0  NEC 402 7 1.41 1.61 20.4 -1.77 -0.46 19.9 93 2 2 2 5 0 0 0  NEC 401 8 1.41 1.61 20.6 -0.63 -0.14 16.1 95 1 2 2 7 0 0 0  NEC 401 9 1.35 1.35 25.0 -1.10 -0.31 11.1 91 3 1 2 7 0 0 0  NEC 401 Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.