PDBsum entry 1qwc

Tunnel analysis for: 1qwc calculated with

MOLE 2.0

PDB id

1qwc

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

2 tunnels, coloured by tunnel radius

5 tunnels, coloured by tunnel radius

5 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.33

1.37

26.2

1.08

0.69

1.5

73

0

0

3

6

4

0

1

HEM 900 A

2

1.33

1.36

31.3

0.57

0.37

8.2

62

1

1

0

5

4

2

1

HEM 900 A H4B 901 A 14W 902 A

3

1.33

1.36

34.4

0.11

0.42

12.4

71

3

2

1

7

4

1

1

HEM 900 A H4B 901 A 14W 902 A

4

1.13

1.26

38.0

-0.16

0.25

13.7

70

3

2

1

7

4

1

1

HEM 900 A

5

1.33

1.36

43.4

0.01

0.20

9.5

69

2

1

1

7

4

1

3

HEM 900 A ZN 950 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.