PDBsum entry 1qw6

Tunnel analysis for: 1qw6 calculated with

MOLE 2.0

PDB id

1qw6

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

4 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.35

1.52

24.5

0.66

0.49

1.9

71

0

0

2

5

4

0

1

HEM 900 A 3AR 902 A

2

1.24

1.52

29.1

-1.10

-0.16

11.4

81

3

1

4

4

2

1

0

HEM 900 A

3

1.25

1.52

29.5

-1.75

-0.43

19.4

76

3

2

3

2

1

2

0

4

1.36

1.37

33.2

0.43

0.50

6.9

73

1

2

3

5

5

0

1

HEM 900 A 3AR 902 A

5

1.23

1.52

33.6

-1.39

-0.41

13.6

73

2

0

3

2

1

2

2

ZN 950 A

6

1.25

1.51

37.7

-0.20

-0.07

8.4

75

2

1

4

6

4

1

1

HEM 900 A 3AR 902 A

7

1.38

1.55

37.8

-0.23

0.28

14.8

71

3

2

1

6

4

1

1

HEM 900 A

8

1.23

1.51

38.2

-1.23

-0.13

18.2

83

5

2

4

6

1

1

1

HEM 900 A H4B 901 A 3AR 902 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.