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PDBsum entry 1qqj
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Tunnel analysis for: 1qqj calculated with  MOLE 2.0
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PDB id
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1qqj
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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6 tunnels,
coloured by tunnel radius |
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7 tunnels,
coloured by
tunnel radius
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7 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.18 |
1.26 |
25.8 |
-0.91 |
0.28 |
13.2 |
75 |
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3 |
2 |
1 |
5 |
3 |
1 |
0 |
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ACT 2001 A CAC 2004 A
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2 |
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1.25 |
1.25 |
27.5 |
-0.93 |
0.44 |
14.0 |
77 |
3 |
2 |
1 |
6 |
3 |
1 |
0 |
ACT 2000 B CAC 2003 B
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3 |
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1.19 |
1.28 |
29.4 |
-1.38 |
-0.16 |
16.1 |
79 |
4 |
1 |
3 |
2 |
2 |
0 |
0 |
CAC 2004 A
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4 |
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1.24 |
1.28 |
32.0 |
-1.44 |
0.08 |
20.0 |
76 |
4 |
1 |
2 |
4 |
2 |
0 |
0 |
CAC 2003 B
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5 |
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1.20 |
1.47 |
29.2 |
-0.62 |
-0.26 |
6.2 |
80 |
2 |
0 |
5 |
3 |
2 |
2 |
1 |
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6 |
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1.10 |
3.29 |
17.6 |
1.46 |
0.50 |
3.2 |
71 |
0 |
1 |
1 |
5 |
4 |
0 |
0 |
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7 |
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1.31 |
1.73 |
20.3 |
-1.21 |
0.08 |
18.0 |
68 |
3 |
1 |
1 |
4 |
3 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program