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PDBsum entry 1qlb
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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 1qlb calculated with MOLE 2.0 PDB id
1qlb
Pores calculated on whole structure Pores calculated excluding ligands
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16 pores, coloured by radius 34 pores, coloured by radius 34 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.01 3.32 32.1 -0.89 -0.24 16.9 86 5 2 1 5 0 1 0  
2 1.30 1.45 34.4 -2.74 -0.51 28.9 75 5 3 1 0 1 1 0  
3 1.17 2.17 66.0 -1.94 -0.43 24.3 86 10 7 7 6 2 1 0  
4 1.13 1.33 70.8 -0.90 -0.18 19.0 86 7 4 5 10 1 1 0  
5 1.55 1.60 80.1 -0.67 -0.27 15.9 86 9 6 6 8 3 0 0  FAD 1656 D FUM 1657 D
6 1.43 1.59 82.0 -0.82 -0.33 16.2 85 11 5 8 7 4 0 0  FAD 1656 D FUM 1657 D
7 1.32 2.67 86.0 -0.91 -0.32 17.8 87 9 7 8 7 2 1 0  FAD 1656 D FUM 1657 D
8 1.20 1.24 90.0 -0.81 -0.34 18.3 85 7 8 4 7 2 2 0  FAD 1656 D FUM 1657 D
9 1.17 1.32 94.6 -1.41 -0.33 20.7 87 7 8 6 8 1 1 0  
10 1.36 2.22 125.3 -1.00 -0.31 18.9 88 11 10 9 13 2 0 0  FAD 1656 D
11 2.02 3.31 32.1 -0.93 -0.25 17.2 86 5 2 1 4 0 1 0  
12 1.31 1.45 34.5 -2.74 -0.51 28.9 75 5 3 1 0 1 1 0  
13 1.17 2.17 66.1 -1.94 -0.43 24.4 86 10 7 7 6 2 1 0  
14 1.13 1.32 70.8 -0.93 -0.21 18.7 86 7 4 5 10 1 1 0  
15 1.25 1.36 74.8 -1.39 -0.33 18.5 86 6 6 6 7 2 1 0  
16 1.51 1.60 80.6 -0.74 -0.27 16.7 86 9 6 6 8 3 0 0  FAD 1656 A FUM 1657 A
17 1.55 1.66 81.7 -0.85 -0.34 16.5 85 11 5 8 7 4 0 0  FAD 1656 A FUM 1657 A
18 1.32 2.68 85.6 -0.93 -0.33 17.7 87 9 7 8 7 2 1 0  FAD 1656 A FUM 1657 A
19 1.14 1.49 107.3 -0.94 -0.34 17.1 85 9 7 8 9 3 2 0  FAD 1656 A FUM 1657 A
20 1.36 1.59 116.1 -0.69 -0.24 15.8 87 12 8 8 15 3 1 0  FAD 1656 A
21 1.61 1.93 29.3 0.68 0.12 3.6 81 1 1 1 3 3 1 0  
22 1.60 1.93 29.3 0.68 0.12 3.6 81 1 1 1 3 3 1 0  
23 1.60 1.89 29.8 0.30 0.24 10.3 76 3 1 0 3 4 1 0  
24 1.60 1.88 29.8 0.30 0.24 10.3 76 3 1 0 3 4 1 0  
25 1.18 1.18 35.8 1.14 0.76 14.5 73 2 1 0 9 5 0 0  HEM 1256 C
26 1.17 1.16 36.1 1.13 0.72 14.5 73 2 1 0 9 5 0 0  HEM 1256 F
27 1.14 1.15 36.5 1.30 0.77 12.3 74 2 1 0 10 5 0 0  HEM 1256 F
28 1.14 1.15 36.5 1.30 0.77 12.3 74 2 1 0 10 5 0 0  HEM 1256 C
29 1.18 1.18 51.0 0.92 0.33 7.0 82 2 1 2 11 3 1 0  HEM 1256 C
30 1.17 1.17 51.2 0.92 0.34 7.2 82 2 1 2 11 3 1 0  HEM 1256 F
31 1.36 1.38 55.0 -1.73 -0.46 21.7 78 8 5 3 6 1 0 0  HEM 1255 F
32 1.35 1.36 59.6 -2.06 -0.58 22.2 80 7 7 6 6 1 0 0  HEM 1255 C
33 1.36 1.36 69.7 -1.07 -0.01 22.1 76 9 4 3 10 5 0 0  HEM 1255 F HEM 1256 F
34 1.34 1.34 74.4 -1.37 -0.18 21.6 78 9 6 6 10 5 0 0  HEM 1255 C HEM 1256 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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