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PDBsum entry 1qdb
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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 1qdb calculated with MOLE 2.0 PDB id
1qdb
Pores calculated on whole structure Pores calculated excluding ligands
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2 pores, coloured by radius 28 pores, coloured by radius 28 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.48 2.42 28.9 -1.76 -0.54 27.1 79 5 6 0 2 1 0 0  
2 1.83 3.66 33.3 -0.74 0.14 20.6 84 7 1 3 4 1 1 2  HEC 516 C HEC 517 C HEC 518 C
3 1.95 3.19 36.9 -2.08 -0.14 23.5 76 5 1 3 1 4 1 1  HEC 515 C HEC 517 C HEC 518 C SO4 1503 C
4 1.38 1.55 37.8 0.14 0.59 13.1 79 5 0 1 6 3 1 1  HEC 516 B
5 1.19 1.24 39.9 -0.44 0.00 13.2 82 6 1 3 6 0 1 3  HEC 516 B HEC 517 B
6 1.38 1.51 41.4 0.16 0.50 12.1 79 5 0 3 7 3 1 1  HEC 516 C
7 1.11 1.11 41.3 -1.00 0.04 18.1 77 4 3 4 2 5 0 1  HEC 515 B SO4 1502 B
8 1.42 1.64 41.8 -0.06 0.39 12.1 80 5 1 3 7 3 1 1  HEC 516 A
9 1.84 3.08 42.2 -0.34 0.25 20.4 83 9 1 3 4 2 1 2  HEC 516 A HEC 517 A HEC 518 A
10 1.92 3.08 42.4 -1.09 0.19 17.8 75 5 1 4 2 5 2 1  HEC 515 A HEC 517 A HEC 518 A SO4 1501 A
11 1.78 3.10 45.4 -0.20 0.40 18.2 75 8 0 2 7 4 1 4  HEC 515 B HEC 516 B HEC 517 B SO4 1502 B
12 1.82 2.52 47.6 0.17 0.51 16.2 75 7 0 3 8 4 2 4  HEC 515 A HEC 516 A HEC 517 A SO4 1501 A
13 1.83 3.55 48.5 -0.07 0.41 17.0 74 7 0 2 8 4 2 4  HEC 515 C HEC 516 C HEC 517 C SO4 1503 C
14 1.39 1.50 50.3 -0.63 0.26 17.0 79 6 1 2 5 4 2 2  HEC 516 C HEC 517 C HEC 518 C
15 1.19 1.25 54.3 -0.70 0.07 13.0 76 5 3 2 5 3 2 2  HEC 516 B HEC 517 B
16 1.40 1.51 54.8 -0.11 0.42 12.4 75 6 0 1 7 6 2 1  HEC 516 C
17 1.20 1.30 56.6 -0.88 0.04 15.8 73 7 1 3 5 4 3 3  HEC 515 B HEC 517 B SO4 1502 B
18 1.46 1.64 58.0 -0.63 0.18 16.1 79 7 2 4 5 4 2 2  HEC 516 A HEC 517 A HEC 518 A
19 1.32 1.53 61.0 -0.19 0.44 14.6 69 6 0 1 7 7 3 3  HEC 515 C HEC 516 C HEC 517 C SO4 1503 C
20 1.86 3.53 61.7 -0.57 0.23 18.4 72 9 0 2 7 6 2 4  HEC 515 C HEC 516 C HEC 517 C SO4 1503 C
21 1.83 3.56 61.9 -0.83 0.07 18.7 80 9 2 3 5 4 2 2  HEC 516 B HEC 516 C HEC 517 C HEC 518 C
22 1.46 2.30 62.4 -1.80 -0.44 22.5 78 7 6 2 2 4 1 0  HEC 516 B HEC 516 C
23 1.45 1.65 62.9 -0.59 0.31 16.2 73 7 1 4 6 6 2 3  HEC 515 A HEC 516 A HEC 517 A SO4 1501 A
24 1.42 1.56 63.5 -0.18 0.46 14.9 71 6 0 1 7 7 3 3  HEC 515 B HEC 516 B HEC 517 B SO4 1502 B
25 1.72 3.74 78.9 -0.68 0.17 17.6 79 9 2 5 7 5 1 2  HEC 518 A HEC 519 A HEC 516 B HEC 519 B
26 1.09 1.07 79.8 -0.98 -0.14 20.6 86 10 5 5 5 1 1 2  HEC 516 B HEC 517 B HEC 518 B
27 1.70 3.71 87.9 -0.19 0.46 15.6 74 13 0 4 10 9 3 3  HEC 518 A HEC 519 A HEC 515 B HEC 517 B HEC 518 B
HEC 519 B SO4 1502 B
28 1.28 1.40 89.8 -0.04 0.33 12.6 79 7 4 5 8 6 2 2  HEC 518 A HEC 519 A HEC 518 B HEC 519 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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