PDBsum entry 1qdb Go to PDB code:  Tunnel analysis for: 1qdb calculated with MOLE 2.0 PDB id 1qdb Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.31 1.48 40.5 -0.23 0.08 12.6 80 7 0 3 6 1 1 3  HEC 516 A HEC 517 A 2 1.34 1.47 42.9 -1.27 -0.14 18.4 81 7 1 4 3 1 2 3  HEC 517 A HEC 518 A 3 1.32 1.49 51.8 -0.77 0.15 15.6 73 7 0 4 5 4 3 3  HEC 515 A HEC 517 A SO4 1501 A 4 1.32 1.44 54.5 -0.53 0.07 9.5 76 5 1 4 5 3 2 2  HEC 516 A HEC 517 A 5 1.36 1.53 65.4 -0.76 0.10 17.9 74 10 0 3 5 2 2 6  HEC 517 A HEC 518 A HEC 519 A 6 1.32 1.43 71.1 -0.63 0.23 20.6 77 11 0 3 8 2 2 5  HEC 517 A HEC 518 A HEC 519 A HEC 519 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.