PDBsum entry 1qb3 Go to PDB code:  Tunnel analysis for: 1qb3 calculated with MOLE 2.0 PDB id 1qb3 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.64 1.64 16.9 -1.25 -0.31 15.9 84 2 0 1 2 1 0 0   2 1.37 1.54 17.7 -1.22 0.21 5.4 55 1 1 1 0 5 0 0   3 1.65 1.65 20.7 -1.53 -0.05 17.3 72 3 0 1 1 3 0 0   4 1.38 1.54 21.3 -1.40 -0.08 10.8 59 2 1 1 0 4 0 0   5 1.24 1.52 16.6 -0.84 -0.34 19.5 77 2 1 0 3 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.