PDBsum entry 1q9c Go to PDB code:  Pore analysis for: 1q9c calculated with MOLE 2.0 PDB id 1q9c Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   17 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.43 1.67 34.6 -2.24 -0.60 19.9 80 5 1 5 0 1 2 0   2 1.76 2.10 54.4 -1.65 -0.65 12.1 77 4 2 5 2 1 2 0  MSE 58 E 3 1.96 2.44 60.5 -2.19 -0.47 28.1 82 9 5 3 3 2 1 0   4 1.96 2.42 75.4 -2.08 -0.61 24.1 82 10 6 6 3 0 2 0   5 1.27 1.25 94.3 -1.61 -0.24 19.4 82 10 5 7 10 3 4 0   6 1.24 1.29 94.4 -2.17 -0.50 25.3 79 9 6 7 5 3 2 1  MSE 58 H 7 1.22 1.65 96.6 -2.38 -0.47 26.1 81 11 6 5 4 4 3 0   8 1.16 1.60 105.1 -1.73 -0.19 22.2 82 10 6 4 11 3 3 0   9 1.33 2.88 110.5 -2.25 -0.60 18.0 80 9 4 11 2 3 4 0   10 1.19 1.20 114.3 -1.51 -0.19 20.8 80 9 7 7 12 4 2 1  MSE 58 H 11 1.26 1.65 137.9 -2.04 -0.51 21.3 80 10 8 8 5 3 4 1  MSE 58 H 12 1.20 1.56 239.0 -2.07 -0.29 25.4 79 23 13 12 15 7 5 0  MSE 173 F Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.