PDBsum entry 1q5c Go to PDB code:  Pore analysis for: 1q5c calculated with MOLE 2.0 PDB id 1q5c Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 pores, coloured by radius 20 pores, coloured by radius 20 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 2.10 29.5 -0.09 0.14 14.8 88 2 2 2 6 1 0 0   2 1.22 1.59 31.0 1.92 0.56 1.9 92 1 0 1 9 1 2 0   3 1.19 1.60 40.2 1.11 0.30 6.9 92 2 2 2 10 1 1 0   4 1.33 1.64 41.6 -0.13 -0.08 14.1 84 3 4 1 5 0 2 0   5 1.21 3.40 68.9 0.25 0.28 15.0 79 6 4 0 9 2 2 0   6 1.17 1.83 70.6 0.35 0.36 14.7 80 4 5 2 15 4 1 0   7 1.20 3.43 74.8 1.43 0.65 7.2 83 2 4 1 19 4 1 0   8 1.24 1.94 76.4 -0.59 0.06 9.2 82 4 1 5 7 2 5 0   9 1.20 1.59 82.0 0.46 0.50 7.8 83 4 1 3 12 3 3 0   10 1.18 1.74 83.4 -0.88 0.05 17.4 76 7 5 5 9 4 3 0   11 1.20 3.11 91.2 0.16 0.33 10.5 79 5 6 4 14 4 3 0   12 1.26 1.74 101.0 -0.53 0.00 12.3 80 7 7 4 10 3 8 0   13 1.35 3.42 107.0 0.53 0.32 8.1 79 3 7 2 18 5 7 0   14 1.31 1.34 30.4 0.06 -0.10 6.0 87 1 0 1 4 1 1 0  NAG 808 B NDG 811 B 15 1.35 1.35 42.1 -1.48 -0.62 16.7 80 3 1 2 1 0 2 0   16 1.09 3.39 33.2 2.19 0.85 1.9 73 0 1 0 12 3 0 0   17 1.09 3.39 33.2 2.19 0.85 1.9 73 0 1 0 12 3 0 0   18 2.43 2.53 44.1 -0.97 -0.32 6.7 81 2 0 2 1 2 2 0   19 2.43 2.53 44.1 -0.95 -0.31 6.6 81 2 0 2 1 2 2 0   20 2.43 2.53 44.1 -0.95 -0.31 6.6 81 2 0 2 1 2 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.