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PDBsum entry 1q4g

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Pore analysis for: 1q4g calculated with MOLE 2.0 PDB id
1q4g
Pores calculated on whole structure Pores calculated excluding ligands

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14 pores, coloured by radius 20 pores, coloured by radius 20 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.40 2.03 27.3 -1.38 -0.43 15.4 75 1 1 5 4 3 0 0  GOL 1758 B NAG 1 E
2 1.17 1.18 31.6 -1.26 -0.45 13.0 77 1 5 4 2 3 1 1  
3 1.73 1.76 35.9 -1.61 -0.43 15.9 70 3 3 4 1 2 3 2  
4 1.38 2.12 40.6 -0.13 0.32 16.7 83 4 1 2 6 1 1 0  BOG 751 A
5 1.17 1.17 44.0 -0.66 -0.26 10.1 75 2 3 5 4 4 2 0  
6 1.18 1.23 45.3 0.56 0.04 4.9 78 1 1 5 9 6 1 0  BFL 701 A NAG 1 H
7 1.62 1.66 50.9 -2.18 -0.58 11.9 75 4 1 8 1 3 3 0  
8 1.21 1.20 61.8 -0.92 -0.30 7.6 78 2 3 10 4 6 2 0  
9 1.26 1.48 63.2 0.91 0.41 5.9 74 5 0 4 12 6 0 0  BFL 1701 B BOG 1751 B BOG 1753 B
10 1.64 1.64 65.5 -1.77 -0.54 11.3 74 4 4 9 2 4 4 1  
11 1.26 1.25 66.7 -0.01 -0.08 6.8 82 4 1 8 9 7 1 0  BFL 1701 B
12 1.26 1.47 69.0 -0.18 0.14 14.5 81 9 0 7 11 4 1 0  BFL 1701 B BOG 1751 B BOG 1752 B
13 1.19 1.20 79.6 0.93 0.36 4.5 73 3 0 4 17 9 1 0  BFL 1701 B BOG 1751 B BOG 1753 B
14 1.57 1.67 84.5 -0.06 0.34 10.2 67 4 1 3 8 5 1 0  BOG 1751 B BOG 1752 B BOG 1753 B
15 1.58 1.71 94.3 -0.36 0.09 5.2 65 2 0 6 7 6 3 0  BOG 1751 B BOG 1752 B BOG 1753 B
16 1.29 1.47 108.0 -0.61 -0.04 9.4 79 7 1 11 11 6 3 0  BFL 1701 B BOG 1751 B BOG 1752 B
17 1.26 1.23 107.9 0.26 0.27 8.0 71 3 4 6 11 8 2 0  BOG 1751 B BOG 1752 B BOG 1753 B
18 1.54 1.68 109.0 -0.56 0.02 11.0 67 5 3 5 9 6 4 1  BOG 1751 B BOG 1752 B BOG 1753 B
19 1.18 1.18 121.7 -0.14 0.10 11.0 80 8 4 11 15 8 2 0  BFL 1701 B BOG 1751 B BOG 1752 B
20 1.27 1.45 122.7 -0.86 -0.11 13.3 78 10 4 10 13 6 4 1  BFL 1701 B BOG 1751 B BOG 1752 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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