PDBsum entry 1q1b

Pore analysis for: 1q1b calculated with

MOLE 2.0

PDB id

1q1b

Pores calculated on whole structure

Pores calculated excluding ligands

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15 pores, coloured by radius

15 pores, coloured by radius

15 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.74

1.86

30.2

-1.59

-0.59

17.6

86

2

4

4

2

1

0

0

2

2.45

2.50

41.8

-1.48

-0.68

11.1

87

3

1

8

1

2

0

0

3

2.12

3.11

48.7

-0.39

-0.01

16.6

87

7

3

8

7

0

2

0

4

2.79

3.96

56.9

-2.68

-0.50

32.1

84

10

6

4

4

0

0

0

5

1.18

2.03

58.4

0.71

0.13

5.9

82

2

0

7

14

2

1

0

6

1.74

3.18

60.0

-0.79

-0.26

20.6

89

7

7

7

7

0

1

0

7

2.14

2.82

60.3

-2.55

-0.63

22.3

85

5

3

6

2

0

1

0

8

1.17

2.02

63.8

0.17

-0.12

6.7

88

3

1

9

13

0

1

0

9

1.99

1.99

69.3

-2.14

-0.53

23.6

87

8

6

5

5

0

0

0

10

2.46

4.09

78.6

-2.01

-0.42

20.0

86

8

5

9

7

1

1

0

11

1.98

2.00

89.9

-0.91

-0.25

17.0

88

9

8

11

10

0

2

0

12

2.08

2.98

92.8

-1.69

-0.40

22.1

87

10

8

10

7

1

1

0

13

2.70

3.81

94.2

-1.91

-0.48

17.8

85

7

5

9

6

1

1

0

14

1.13

2.41

112.6

-0.42

-0.05

14.5

87

9

10

11

17

0

2

0

15

1.16

2.55

127.8

-0.68

-0.16

15.8

87

11

8

14

20

0

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.