PDBsum entry 1q0h

Tunnel analysis for: 1q0h calculated with

MOLE 2.0

PDB id

1q0h

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

1 tunnel, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.44

2.11

45.1

-0.22

-0.04

9.9

91

2

2

8

7

1

0

1

MSE 214 A MSE 225 A MSE 226 A MSE 276 A FOM 400 A

2

1.34

1.96

51.7

-0.35

-0.19

8.7

87

2

1

6

7

1

1

1

MSE 214 A MSE 225 A MSE 226 A MSE 276 A FOM 400 A

3

1.20

1.31

26.3

0.86

0.20

4.2

84

1

0

2

8

1

1

0

MSE 98 A MSE 284 A

4

1.21

1.31

28.2

0.43

-0.01

4.2

83

1

0

2

4

1

1

0

MSE 98 A MSE 284 A

5

1.15

1.15

30.2

0.48

0.03

4.1

83

1

0

2

7

1

1

0

MSE 98 A MSE 284 A

6

1.23

1.54

30.9

1.97

0.58

5.3

78

1

0

0

4

1

0

0

MSE 259 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.