PDBsum entry 1pyt Go to PDB code:  Tunnel analysis for: 1pyt calculated with MOLE 2.0 PDB id 1pyt Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 1.18 20.8 -0.17 -0.34 5.9 79 1 1 1 4 1 1 0   2 1.16 1.28 22.5 -0.21 -0.10 7.3 77 1 1 2 2 2 1 0   3 1.04 1.52 34.5 -1.02 -0.32 12.0 73 2 1 4 5 3 0 0   4 1.12 2.37 37.2 -1.27 -0.33 14.6 77 2 2 3 4 3 0 0   5 1.03 1.52 37.8 -0.95 -0.49 12.8 79 2 2 2 6 2 0 0   6 1.17 1.24 85.4 -0.92 -0.25 13.2 83 8 3 8 9 4 0 0   7 1.16 1.53 86.0 -0.78 -0.31 12.5 82 8 3 7 11 4 0 0   8 1.23 1.42 20.5 1.37 0.39 8.4 74 2 1 1 6 1 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.