PDBsum entry 1pym Go to PDB code:  Tunnel analysis for: 1pym calculated with MOLE 2.0 PDB id 1pym Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.14 1.15 27.6 1.11 0.06 4.0 88 2 0 0 7 2 0 0  MSE 189 B MSE 203 B MSE 230 B 2 1.15 1.15 62.9 0.18 -0.12 4.5 85 1 0 3 7 3 1 0  MSE 189 B MSE 203 B MSE 230 B 3 1.60 2.70 19.3 1.79 0.46 1.6 88 0 0 1 7 2 0 0  MSE 189 A MSE 203 A MSE 230 A 4 1.62 2.63 20.2 1.33 0.24 4.9 91 2 0 0 7 1 0 0  MSE 189 A MSE 203 A MSE 230 A 5 1.19 1.19 23.8 1.27 0.19 2.0 83 0 0 1 6 3 0 0  MSE 189 A MSE 203 A MSE 230 A 6 1.16 1.17 24.6 0.86 0.05 6.0 86 2 0 0 6 2 0 0  MSE 189 A MSE 203 A MSE 230 A 7 1.35 1.35 19.1 0.33 -0.10 12.2 80 1 1 2 5 0 0 0  MSE 14 A MSE 234 A 8 1.36 1.36 19.6 -0.17 -0.35 13.8 80 1 1 1 5 0 0 0  MSE 14 A MSE 234 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.