PDBsum entry 1pv7

Pore analysis for: 1pv7 calculated with

MOLE 2.0

PDB id

1pv7

Pores calculated on whole structure

Pores calculated excluding ligands

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10 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.67

1.81

25.8

-0.11

0.09

13.9

81

2

2

2

6

2

1

0

2

1.26

1.54

32.1

-1.59

-0.56

19.3

90

3

1

5

3

1

0

0

3

1.40

1.60

37.2

-1.51

-0.54

18.5

90

3

1

5

3

1

0

0

4

1.24

1.44

43.6

-0.13

0.11

7.8

71

1

2

2

9

6

1

0

YIO 1 F GAL 2 F

5

1.50

1.70

47.2

-0.74

-0.11

11.8

79

2

3

5

6

6

1

0

YIO 1 F GAL 2 F

6

1.52

1.58

50.1

-0.59

-0.01

11.7

79

2

3

4

7

6

1

0

YIO 1 E GAL 2 E

7

1.49

1.55

52.8

-0.41

0.00

8.2

71

2

2

2

8

6

2

0

YIO 1 E GAL 2 E

8

1.52

1.54

138.5

0.98

0.50

8.6

73

3

6

2

22

10

4

1

9

1.64

1.78

143.8

0.61

0.32

9.6

81

5

5

5

23

8

1

1

YIO 1 F GAL 2 F

10

2.09

3.65

143.0

0.73

0.39

12.0

82

5

7

7

22

8

1

1

11

1.28

1.56

154.1

0.74

0.36

8.9

79

5

5

7

29

10

0

2

YIO 1 E GAL 2 E

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.