PDBsum entry 1prj Go to PDB code:  Tunnel analysis for: 1prj calculated with MOLE 2.0 PDB id 1prj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.09 2.42 37.8 -1.91 -0.34 20.8 80 4 3 4 1 3 0 0  PLP 999 2 1.03 1.04 40.3 -0.84 -0.50 12.2 88 2 3 3 3 2 1 0  NBG 998 PLP 999 3 1.40 2.69 19.9 -0.61 0.02 13.5 77 1 0 2 4 1 0 0   4 1.72 1.89 16.1 0.14 0.01 17.4 79 3 1 1 3 0 0 0   5 1.23 1.23 16.3 -1.28 -0.06 19.6 79 3 1 1 2 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.