 |
PDBsum entry 1pm0
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 1pm0 calculated with MOLE 2.0
|
PDB id
|
|
|
|
1pm0
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
5 pores,
coloured by radius |
 |
6 pores,
coloured by radius
|
6 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
3.04 |
3.04 |
28.6 |
-1.86 |
-0.48 |
21.5 |
82 |
 |
4 |
2 |
1 |
1 |
2 |
0 |
0 |
 |
CA 404 ATP 1814 C 1813 B T 1903 C G 1906 C A 1907 C A 1908 C T 1909 C C 1910 C C 1911 C
|
 |
 |
2 |
 |
1.79 |
2.97 |
30.7 |
-1.88 |
-0.24 |
24.0 |
88 |
6 |
2 |
3 |
2 |
1 |
0 |
0 |
CA 404 ATP 1814 C 1813 B T 1903 C A 1908 C
|
 |
3 |
 |
2.26 |
2.28 |
31.2 |
-0.37 |
0.20 |
22.5 |
94 |
4 |
0 |
2 |
2 |
0 |
0 |
0 |
A 1807 B G 1808 B G 1809 B A 1810 B T 1811 B T 1904 C T 1905 C G 1906 C A 1907 C A 1908 C T 1909 C C 1910 C C 1911 C T 1913 C C 1914 C C 1915 C C 1916 C
|
 |
4 |
 |
1.60 |
1.76 |
40.3 |
-2.32 |
-0.29 |
29.9 |
81 |
6 |
3 |
2 |
2 |
2 |
1 |
0 |
CA 404 ATP 1814 C 1813 B A 1908 C
|
 |
5 |
 |
1.51 |
1.51 |
43.6 |
-1.94 |
-0.49 |
24.1 |
85 |
6 |
1 |
2 |
1 |
1 |
0 |
0 |
CA 404 ATP 1814 A 1807 B G 1808 B G 1809 B A 1810 B T 1811 B T 1812 B C 1813 B T 1903 C G 1906 C A 1907 C A 1908 C T 1909 C C 1910 C C 1911 C T 1912 C T 1913 C C 1914 C C 1915 C C 1916 C
|
 |
6 |
 |
1.51 |
1.51 |
45.3 |
-2.42 |
-0.43 |
26.2 |
86 |
6 |
1 |
3 |
1 |
1 |
0 |
0 |
A 1807 B G 1808 B G 1809 B A 1810 B T 1811 B T 1812 B C 1813 B G 1906 C A 1907 C A 1908 C T 1909 C C 1910 C C 1911 C T 1912 C T 1913 C C 1914 C C 1915 C C 1916 C
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |