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PDBsum entry 1ph7

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 1ph7 calculated with MOLE 2.0 PDB id
1ph7
Pores calculated on whole structure Pores calculated excluding ligands

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2 pores, coloured by radius 2 pores, coloured by radius 2 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.67 1.91 67.7 -1.05 -0.54 12.4 86 5 2 6 2 3 0 0  DG 3 H DG 4 H
2 1.14 1.14 105.0 -0.83 -0.41 11.4 79 4 5 3 5 3 3 0  DG 4 D DT 5 D DT 6 D DT 7 D DT 8 D DG 9 D DI 10 D
DG 11 D DG 12 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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