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PDBsum entry 1ph2

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 1ph2 calculated with MOLE 2.0 PDB id
1ph2
Pores calculated on whole structure Pores calculated excluding ligands

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4 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.27 1.27 34.2 -0.31 -0.07 12.8 75 4 1 3 3 4 0 0  DT 5 D DT 6 D DT 7 D DG 9 D DG 2 G DG 3 G DT 5 H
2 1.55 1.77 42.2 0.15 -0.08 7.5 76 5 0 1 4 3 1 0  DG 3 D DG 4 D DT 5 D DT 6 D DT 7 D DG 9 D DG 2 G
DG 3 G DT 5 H
3 2.20 2.45 51.6 -1.56 -0.53 13.4 87 3 0 3 1 1 1 0  DG 2 G DG 3 G DT 5 G DT 6 G DT 7 G DG 2 H DG 3 H
DG 4 H DT 5 H
4 1.56 1.84 58.4 -0.99 -0.48 14.3 85 4 2 4 2 2 0 0  DG 3 G DG 4 H DT 5 H

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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