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PDBsum entry 1pg4

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 1pg4 calculated with MOLE 2.0 PDB id
1pg4
Pores calculated on whole structure Pores calculated excluding ligands

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6 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.94 1.93 25.3 -2.29 -0.66 27.1 89 5 4 4 2 0 0 0  
2 2.33 2.53 38.0 -1.14 -0.32 15.4 89 5 1 3 7 1 2 0  COA 990 A PRX 999 A
3 1.94 4.81 40.9 -0.96 -0.13 15.9 82 5 2 2 5 2 3 0  COA 990 A PRX 999 A EDO 1803 A
4 1.86 1.86 42.2 -1.05 -0.36 11.6 84 5 1 2 6 2 3 0  COA 991 B PRX 998 B
5 1.24 1.30 47.3 -0.23 0.02 15.3 82 4 4 5 7 2 3 0  COA 990 A EDO 1803 A
6 1.83 3.07 55.4 -0.71 -0.12 15.9 88 5 4 5 9 2 2 0  COA 990 A PRX 999 A
7 1.55 1.78 75.8 -0.81 -0.18 14.7 89 6 1 3 8 2 2 0  COA 991 B PRX 998 B
8 1.55 1.78 82.7 -1.22 -0.34 15.1 82 6 2 4 5 3 3 0  PRX 998 B
9 1.45 1.63 97.7 -1.10 -0.34 18.7 88 8 8 6 11 2 2 0  COA 991 B PRX 998 B
10 1.66 1.70 100.3 -1.17 -0.31 20.3 87 12 8 5 10 2 2 0  COA 991 B PRX 998 B
11 1.52 1.76 101.7 -1.89 -0.60 26.0 89 9 9 5 2 0 0 0  
12 1.43 1.62 108.7 -1.81 -0.67 23.1 91 5 11 7 4 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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