PDBsum entry 1pd5 Go to PDB code:  Pore analysis for: 1pd5 calculated with MOLE 2.0 PDB id 1pd5 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   18 pores, coloured by radius 18 pores, coloured by radius 18 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.00 2.17 26.8 0.32 0.35 6.7 70 2 1 2 3 8 1 0   2 1.12 1.25 43.4 -0.34 0.06 17.0 76 4 4 1 4 6 0 0   3 1.83 1.99 103.9 -0.68 -0.09 12.2 74 5 5 8 6 13 1 0   4 1.77 1.99 106.8 -0.70 0.06 10.7 75 7 4 12 8 14 1 0   5 1.82 1.93 131.1 -1.30 -0.21 13.4 79 6 4 11 5 9 1 0   6 1.74 1.92 145.3 -1.71 -0.27 13.6 76 7 8 15 5 11 1 0   7 1.68 1.87 150.0 -0.96 -0.22 12.9 76 6 8 13 6 14 1 0   8 1.22 1.13 149.2 -1.90 -0.42 25.9 81 14 16 9 7 9 1 0   9 1.91 2.14 149.4 -0.99 -0.17 14.0 79 6 7 10 6 12 1 0   10 1.75 2.21 193.6 -0.64 0.09 10.8 74 8 6 15 11 22 2 0   11 1.19 1.45 233.1 -1.47 -0.34 19.4 79 11 14 11 7 11 2 0   12 1.40 2.22 26.3 -2.46 -0.17 35.1 82 5 2 2 1 1 1 0   13 1.77 1.93 42.9 1.03 0.48 5.9 69 2 1 1 5 10 1 0   14 1.89 1.99 86.2 0.40 0.45 13.6 71 5 4 1 8 13 0 0   15 1.67 1.79 95.4 -1.02 -0.07 10.5 76 5 3 12 6 13 1 0   16 1.27 1.33 161.0 -0.87 0.01 12.2 73 8 5 8 6 17 2 0   17 2.01 2.09 37.4 0.78 0.46 4.0 67 2 0 1 4 10 1 0   18 2.13 2.91 33.6 0.81 0.55 5.1 70 2 0 2 4 9 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.