PDBsum entry 1pam Go to PDB code:  Tunnel analysis for: 1pam calculated with MOLE 2.0 PDB id 1pam Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 2.84 24.3 -2.58 -0.18 22.3 84 4 1 4 0 2 1 0   2 1.16 2.63 26.1 -2.35 -0.41 19.1 84 4 1 3 0 2 1 0   3 1.09 1.79 18.1 -1.27 -0.60 6.4 89 1 1 2 0 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.