PDBsum entry 1oyh

Tunnel analysis for: 1oyh calculated with

MOLE 2.0

PDB id

1oyh

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
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visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.15

1.26

20.4

-0.78

-0.13

18.4

75

1

3

1

5

2

0

0

2

1.12

2.97

26.1

1.48

0.63

5.5

76

2

1

2

7

2

0

0

3

1.25

2.82

23.4

-0.04

0.22

8.9

75

2

1

3

4

3

1

0

4

1.25

2.78

28.6

0.39

0.39

5.0

75

1

0

3

4

3

1

0

5

1.25

2.75

36.3

-0.02

0.25

8.2

78

2

1

3

5

3

1

0

6

1.19

1.19

23.8

0.34

-0.34

4.8

80

1

1

1

4

2

1

0

7

1.25

1.25

22.5

-0.67

0.02

10.6

84

3

2

0

4

2

0

0

8

1.25

1.26

20.2

-0.36

-0.37

4.8

89

1

1

3

3

0

1

0

NAG 1 B NAG 2 B

9

1.41

2.84

15.6

0.42

0.22

5.4

68

2

0

2

2

3

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.