PDBsum entry 1oop Go to PDB code:  Tunnel analysis for: 1oop calculated with MOLE 2.0 PDB id 1oop Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.12 1.19 61.2 0.07 0.07 11.8 83 3 3 2 12 3 2 0  SPH 284 A 2 1.15 2.17 70.7 0.39 0.28 10.3 80 3 3 1 17 5 3 0  SPH 284 A 3 1.25 1.44 18.1 -1.67 -0.11 18.5 75 4 2 3 1 1 1 0   4 1.27 1.45 19.3 -2.04 -0.28 23.7 81 4 2 4 1 1 0 0   5 1.38 1.38 18.1 -0.78 -0.26 10.3 72 2 0 1 2 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.