spacer
spacer

PDBsum entry 1onh

Go to PDB code: 
Top Page protein ligands tunnels links
Tunnel analysis for: 1onh calculated with MOLE 2.0 PDB id
1onh
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.04 2.04 15.7 -0.39 -0.09 8.4 84 2 1 4 3 1 0 0  WY4 400 A
2 2.04 2.04 16.5 -0.70 -0.21 9.8 92 2 1 5 2 1 0 0  WY4 400 A
3 2.00 2.09 17.9 -0.59 -0.34 15.1 91 2 1 2 3 0 0 0  
4 1.72 1.89 24.4 0.27 -0.14 10.8 84 2 1 0 5 0 1 0  GOL 411 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer