PDBsum entry 1ofd Go to PDB code:  Pore analysis for: 1ofd calculated with MOLE 2.0 PDB id 1ofd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.30 1.34 28.3 -2.61 -0.68 25.2 88 4 5 6 0 0 0 0   2 1.20 1.39 81.6 -2.03 -0.53 19.3 82 14 11 12 6 2 4 1   3 1.32 1.41 134.9 -1.96 -0.53 23.8 82 11 11 7 2 0 4 2   4 1.19 1.23 144.7 -1.66 -0.44 18.4 84 15 10 17 8 3 2 1   5 1.24 1.40 151.8 -2.05 -0.49 21.5 82 11 11 9 5 2 6 1   6 1.78 1.82 43.2 -1.03 -0.17 16.2 82 5 0 4 4 1 1 0   7 1.31 2.02 99.8 -0.68 -0.22 17.9 77 13 8 3 11 5 1 0   8 1.20 1.20 63.0 -2.00 -0.51 18.4 82 10 6 11 6 2 5 1   9 1.89 1.95 27.1 -0.96 -0.48 15.6 80 1 2 2 5 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.