 |
PDBsum entry 1ofd
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 1ofd calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1ofd
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
8 tunnels,
coloured by tunnel radius |
|
6 tunnels,
coloured by
tunnel radius
|
6 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.21 |
3.44 |
65.4 |
-2.21 |
-0.62 |
17.9 |
81 |
|
9 |
8 |
11 |
3 |
2 |
1 |
1 |
|
|
 |
|
2 |
 |
1.20 |
3.35 |
78.6 |
-2.08 |
-0.63 |
18.0 |
82 |
10 |
11 |
11 |
5 |
2 |
2 |
1 |
|
|
3 |
 |
1.10 |
1.10 |
31.1 |
0.20 |
-0.12 |
10.5 |
72 |
3 |
2 |
3 |
6 |
3 |
0 |
0 |
|
|
4 |
 |
1.22 |
1.33 |
16.3 |
-0.09 |
-0.13 |
9.7 |
75 |
2 |
1 |
2 |
3 |
2 |
2 |
0 |
|
|
5 |
 |
1.23 |
1.41 |
15.7 |
0.10 |
-0.12 |
8.6 |
74 |
2 |
1 |
1 |
3 |
2 |
2 |
0 |
|
 |
6 |
 |
0.99 |
0.99 |
18.1 |
0.20 |
-0.25 |
10.1 |
74 |
0 |
3 |
2 |
2 |
2 |
2 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program