PDBsum entry 1od4

Pore analysis for: 1od4 calculated with

MOLE 2.0

PDB id

1od4

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

9 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.55

1.59

27.8

-2.22

-0.25

30.1

74

5

6

0

2

3

1

0

2

1.66

1.99

40.6

-1.38

-0.22

10.6

87

3

3

9

9

2

1

0

3

1.87

1.88

40.8

-1.22

-0.14

10.2

84

2

2

8

8

3

2

0

4

1.66

2.00

42.0

-1.96

-0.28

9.8

75

2

3

10

5

7

4

0

5

1.38

2.88

57.6

-0.36

-0.18

12.5

83

7

5

3

20

3

4

0

MSE 1631 B MSE 2014 C MSE 2030 C MSE 2103 C

6

1.47

1.54

68.4

-2.14

-0.24

30.3

80

10

5

5

7

3

2

0

MSE 1816 B

7

1.46

1.55

68.4

-2.00

-0.24

26.1

82

12

4

6

4

3

2

0

MSE 1816 B

8

2.22

2.87

90.2

-0.59

-0.21

8.4

87

4

3

12

15

1

4

0

MSE 1765 B

9

1.63

2.02

98.9

-0.52

-0.19

7.6

88

5

4

18

19

3

5

0

MSE 1765 B

10

1.87

1.88

102.9

-0.79

-0.27

8.9

88

7

3

18

19

4

5

0

MSE 1765 B

11

1.37

2.15

46.6

-0.10

0.00

13.0

83

7

4

3

16

3

3

0

MSE 2014 B MSE 2103 B MSE 1631 C

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.