PDBsum entry 1od4 Go to PDB code:  Tunnel analysis for: 1od4 calculated with MOLE 2.0 PDB id 1od4 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   12 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 0.92 0.98 74.6 0.80 0.24 9.7 77 7 5 3 26 6 6 0  MSE 1947 B MSE 1948 B MSE 2012 B MSE 2014 B MSE 2103 B MSE 1631 C 2 1.20 1.40 25.2 -0.46 -0.04 10.8 74 1 3 4 7 3 3 0   3 1.20 1.40 26.1 -0.21 0.15 5.9 75 2 3 3 6 3 2 0   4 1.43 1.43 22.5 -0.28 -0.19 10.0 86 3 2 5 4 1 0 0   5 1.67 1.81 23.1 -1.52 -0.62 16.0 85 4 2 4 4 0 1 0   6 1.47 1.47 15.4 -1.12 -0.60 17.0 78 2 3 4 4 0 1 0   7 1.24 3.41 21.1 0.71 0.25 5.7 77 1 3 1 6 4 1 0  MSE 1564 C 8 1.15 1.20 15.6 1.55 0.26 3.4 91 0 1 1 7 1 1 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.