 |
PDBsum entry 1o5h
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 1o5h calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1o5h
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
3 tunnels,
coloured by tunnel radius |
|
8 tunnels,
coloured by
tunnel radius
|
8 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.18 |
2.14 |
25.0 |
-1.23 |
-0.22 |
15.7 |
85 |
|
1 |
3 |
4 |
3 |
2 |
1 |
0 |
|
|
 |
|
2 |
 |
1.16 |
1.17 |
29.0 |
-1.10 |
-0.46 |
16.2 |
89 |
0 |
4 |
3 |
3 |
1 |
1 |
0 |
MSE 81 B
|
|
3 |
 |
1.18 |
2.09 |
33.6 |
-1.04 |
-0.10 |
14.3 |
81 |
3 |
2 |
4 |
3 |
3 |
2 |
0 |
MSE 88 B
|
|
4 |
 |
1.16 |
2.01 |
26.0 |
-0.91 |
-0.29 |
16.7 |
87 |
0 |
3 |
4 |
4 |
2 |
1 |
0 |
|
|
5 |
 |
1.18 |
2.36 |
37.9 |
-1.07 |
-0.53 |
15.3 |
85 |
0 |
4 |
3 |
4 |
1 |
2 |
0 |
MSE 14 A MSE 41 B
|
|
6 |
 |
1.37 |
1.48 |
15.4 |
-0.02 |
-0.22 |
15.9 |
79 |
2 |
4 |
0 |
4 |
0 |
0 |
1 |
MSE 66 B
|
|
7 |
 |
1.86 |
2.35 |
16.0 |
-0.69 |
-0.28 |
23.0 |
82 |
3 |
2 |
0 |
5 |
0 |
0 |
1 |
MSE 66 B
|
 |
8 |
 |
1.37 |
1.48 |
18.6 |
-1.00 |
-0.32 |
24.6 |
80 |
4 |
3 |
0 |
4 |
0 |
0 |
1 |
MSE 66 B
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program