spacer
spacer

PDBsum entry 1o1k

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 1o1k calculated with MOLE 2.0 PDB id
1o1k
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
1 pore, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.68 4.18 40.6 -0.98 -0.13 19.8 82 5 3 4 6 3 2 0  
2 1.28 2.84 40.8 2.07 0.77 5.7 70 3 0 0 17 3 0 0  HEM 150 C
3 1.18 2.05 152.0 -0.34 0.20 19.6 75 14 5 3 21 6 1 0  HEM 150 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer