PDBsum entry 1o1k

Tunnel analysis for: 1o1k calculated with

MOLE 2.0

PDB id

1o1k

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

8 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.31

2.73

31.6

-1.03

0.03

18.9

82

5

1

2

4

2

1

1

2

1.31

2.87

34.5

-0.73

0.05

15.2

83

5

1

3

4

2

1

1

3

1.32

2.60

45.6

-0.91

0.06

20.5

80

10

2

2

8

2

1

1

4

1.30

2.77

46.0

-1.01

0.05

21.3

80

10

2

2

8

2

1

1

5

1.31

2.70

48.9

-1.33

-0.05

24.1

79

10

2

2

9

2

1

1

6

1.32

2.63

49.1

-1.27

-0.02

24.3

79

10

2

2

9

2

1

1

7

1.62

1.75

19.9

-1.36

-0.46

14.6

84

3

1

2

2

0

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.