PDBsum entry 1o1d Go to PDB code:  Pore analysis for: 1o1d calculated with MOLE 2.0 PDB id 1o1d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   33 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.16 4.74 68.3 -1.90 -0.25 20.9 78 9 4 4 4 3 2 0   2 2.47 2.69 74.9 -1.80 -0.45 23.8 81 4 9 1 4 1 3 0  MLY 839 D MLY 827 J MLY 833 J MLY 837 J MLY 839 J 3 1.49 1.63 97.0 -1.64 -0.30 22.2 80 12 12 3 10 4 1 0   4 1.43 1.63 110.2 -1.44 -0.30 21.4 80 15 10 3 10 5 1 0   5 1.52 1.65 137.6 -1.21 -0.30 20.4 85 14 17 5 19 5 0 0   6 1.95 2.03 173.0 -1.10 -0.23 20.1 82 10 17 7 12 7 0 0  MLY 598 M MLY 600 M MLY 681 M 7 2.40 5.30 173.2 -1.72 -0.41 22.2 85 17 21 9 19 5 1 0   8 1.20 1.24 229.9 -1.18 -0.25 19.7 83 12 15 9 16 5 1 0  MLY 19 G MLY 84 G MLY 87 G MLY 190 G MLY 681 G 9 1.26 1.66 240.3 -1.32 -0.38 22.1 83 19 28 9 20 7 0 0  MLY 272 M MLY 431 M MLY 598 M MLY 600 M 10 1.23 1.31 265.6 -0.98 -0.23 17.5 83 16 19 12 22 6 1 0  MLY 190 P MLY 415 P MLY 598 P MLY 681 P 11 1.48 1.56 261.5 -1.34 -0.34 21.2 83 18 24 9 18 8 0 0  MLY 598 M MLY 600 M MLY 681 M 12 1.21 2.01 276.0 -1.70 -0.47 23.8 83 22 31 13 20 7 1 0  MLY 272 M MLY 431 M MLY 598 M MLY 600 M 13 1.23 1.33 285.9 -1.14 -0.30 19.1 84 18 22 14 25 6 1 0  MLY 190 P MLY 415 P MLY 598 P MLY 681 P 14 1.23 3.59 294.8 -0.48 -0.01 17.4 79 15 19 4 30 10 5 1  MLY 35 J MLY 84 J MLY 505 J MLY 764 J MLY 827 J MLY 833 J MLY 837 J MLY 839 J 15 2.14 4.73 297.3 -1.73 -0.44 22.8 84 21 27 13 20 8 1 0  MLY 236 M MLY 598 M MLY 600 M MLY 681 M 16 1.30 1.40 318.4 -1.24 -0.31 19.2 86 18 28 18 33 9 0 0  MLY 190 G MLY 598 G MLY 600 G MLY 681 G 17 1.28 3.17 322.4 -1.23 -0.25 20.7 82 23 33 13 30 14 1 0  MLY 35 J MLY 84 J MLY 431 J MLY 505 J MLY 598 J MLY 600 J MLY 764 J 18 1.98 2.27 333.0 -1.58 -0.41 22.1 86 26 35 15 33 10 0 0  MLY 236 A MLY 598 A MLY 600 A MLY 681 A 19 1.20 1.25 348.3 -1.31 -0.35 19.9 86 23 34 19 37 9 0 0  MLY 190 D MLY 236 D MLY 598 D MLY 600 D MLY 681 D 20 1.56 2.67 366.3 -1.51 -0.33 22.3 83 28 36 15 31 13 1 0  MLY 19 G MLY 84 G MLY 87 G MLY 431 G MLY 598 G MLY 600 G 21 1.25 1.53 380.8 -1.06 -0.29 17.9 85 16 33 18 28 11 0 0  MLY 236 A MLY 598 A MLY 600 A MLY 681 A MLY 190 G MLY 236 G MLY 598 G MLY 600 G MLY 681 G 22 1.30 1.36 394.7 -0.63 -0.15 18.4 82 15 23 10 30 6 1 0  MLY 190 P MLY 236 P MLY 681 P MLY 768 P MLY 839 P 23 1.53 2.46 426.4 -1.41 -0.34 21.8 83 26 41 15 29 15 1 0  MLY 598 A MLY 600 A MLY 681 A MLY 19 G MLY 84 G MLY 87 G MLY 431 G MLY 598 G MLY 600 G 24 1.24 3.38 441.4 -0.88 -0.17 18.1 82 21 38 20 35 17 1 0  MLY 190 G MLY 598 G MLY 600 G MLY 681 G MLY 35 J MLY 84 J MLY 431 J MLY 505 J MLY 598 J MLY 600 J MLY 764 J 25 1.28 1.77 465.7 -1.26 -0.25 21.3 82 28 40 13 39 13 5 1  MLY 839 D MLY 431 J MLY 598 J MLY 600 J 26 1.22 2.43 456.0 -1.22 -0.29 20.9 83 29 45 17 36 18 1 0  MLY 598 A MLY 600 A MLY 681 A MLY 35 J MLY 84 J MLY 431 J MLY 505 J MLY 598 J MLY 600 J MLY 764 J 27 1.37 1.60 478.7 -0.95 -0.21 20.7 81 29 35 10 34 11 2 0  MLY 415 P MLY 431 P MLY 598 P MLY 768 P MLY 839 P 28 1.22 2.41 489.3 -1.20 -0.22 21.2 80 31 46 17 33 21 2 0  MLY 19 G MLY 84 G MLY 87 G MLY 431 G MLY 598 G MLY 600 G MLY 35 J MLY 84 J MLY 431 J MLY 505 J MLY 598 J MLY 600 J MLY 764 J 29 1.11 1.25 599.2 -1.28 -0.29 21.5 83 34 51 17 44 17 5 1  MLY 236 A MLY 598 A MLY 600 A MLY 681 A MLY 839 D MLY 431 J MLY 598 J MLY 600 J 30 1.39 1.45 32.2 0.07 -0.12 15.2 85 1 3 1 4 2 0 0  MLY 30 D MLY 49 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.