PDBsum entry 1o1d Go to PDB code:  Tunnel analysis for: 1o1d calculated with MOLE 2.0 PDB id 1o1d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 3.42 47.5 2.01 0.56 4.6 84 2 0 1 15 0 1 1  MLY 84 D 2 1.18 1.97 94.5 0.10 0.14 14.6 83 7 6 4 15 4 1 0  MLY 84 G 3 1.15 1.80 15.2 2.43 0.80 1.3 81 0 0 0 5 1 0 0   4 1.22 1.28 15.2 0.23 0.26 5.6 66 1 0 1 2 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.