spacer
spacer

PDBsum entry 1nql

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) links
Hormone/growth factor receptor PDB id
1nql
Contents
Protein chains
612 a.a. *
48 a.a. *
Ligands
NAG-NAG-BMA ×2
NAG-NAG
NAG ×5
* Residue conservation analysis

References listed in PDB file
Key reference
Title Egf activates its receptor by removing interactions that autoinhibit ectodomain dimerization.
Authors K.M.Ferguson, M.B.Berger, J.M.Mendrola, H.S.Cho, D.J.Leahy, M.A.Lemmon.
Ref. Mol Cell, 2003, 11, 507-517. [DOI no: 10.1016/S1097-2765(03)00047-9]
PubMed id 12620237
Abstract
Epidermal growth factor (EGF) receptor is the prototype of the ErbB (HER) family receptor tyrosine kinases (RTKs), which regulate cell growth and differentiation and are implicated in many human cancers. EGF activates its receptor by inducing dimerization of the 621 amino acid EGF receptor extracellular region. We describe the 2.8 A resolution crystal structure of this entire extracellular region (sEGFR) in an unactivated state. The structure reveals an autoinhibited configuration, where the dimerization interface recently identified in activated sEGFR structures is completely occluded by intramolecular interactions. To activate the receptor, EGF binding must promote a large domain rearrangement that exposes this dimerization interface. This contrasts starkly with other RTK activation mechanisms and suggests new approaches for designing ErbB receptor antagonists.
Figure 2.
Figure 2. Space-Filling Representation of sEGFR with Domain I-Bound EGFsEGFR is shown in CPK representation, with subdomains colored as in Figure 1. Bound EGF is magenta. EGF is intimately associated with domain I (blue) but does not come closer than 4 Å away from domain III. The side chain of Y14 (projecting from the left-hand side of EGF) is too distant from domain III to participate in hydrogen bonding.
Figure 6.
Figure 6. Different Domain Orientations in Autoinhibited Structures of sEGFR and sErbB3The structures of autoinhibited sEGFR and sErbB3 (Cho and Leahy, 2002) were overlaid by superimposition of domains III and IV.(A) The sEGFR/sErbB3 overlay is shown in the orientation used for sEGFR in Figure 1A. sEGFR is gray; sErbB3 is magenta.(B) The same sEGFR/sErbB3 overlay is shown in an orthogonal view to illustrate the different orientation of the domain I/II fragment in the two structures. The difference is approximated by a 60° rotation about the axis marked with a black circle.
The above figures are reprinted by permission from Cell Press: Mol Cell (2003, 11, 507-517) copyright 2003.
PROCHECK
Go to PROCHECK summary
 Headers

 

spacer

spacer