 |
PDBsum entry 1nmc
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 1nmc calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1nmc
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
7 tunnels,
coloured by tunnel radius |
|
7 tunnels,
coloured by
tunnel radius
|
7 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.14 |
2.46 |
17.8 |
-0.49 |
0.14 |
24.8 |
71 |
|
3 |
2 |
0 |
4 |
2 |
0 |
0 |
|
|
 |
|
2 |
 |
1.14 |
2.46 |
17.8 |
-0.49 |
0.17 |
24.3 |
71 |
3 |
2 |
0 |
4 |
2 |
0 |
0 |
|
|
3 |
 |
1.26 |
1.41 |
15.0 |
-2.60 |
-0.62 |
32.0 |
73 |
3 |
4 |
1 |
1 |
1 |
0 |
0 |
|
|
4 |
 |
1.25 |
1.54 |
23.8 |
-2.11 |
-0.41 |
28.5 |
68 |
3 |
3 |
0 |
2 |
1 |
1 |
0 |
|
|
5 |
 |
1.26 |
1.41 |
15.0 |
-2.60 |
-0.62 |
32.0 |
73 |
3 |
4 |
1 |
1 |
1 |
0 |
0 |
|
|
6 |
 |
1.25 |
1.54 |
23.8 |
-2.11 |
-0.41 |
28.5 |
68 |
3 |
3 |
0 |
2 |
1 |
1 |
0 |
|
 |
7 |
 |
1.55 |
1.61 |
15.5 |
-1.76 |
-0.57 |
18.6 |
82 |
3 |
2 |
1 |
0 |
1 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program