PDBsum entry 1ndf Go to PDB code:  Pore analysis for: 1ndf calculated with MOLE 2.0 PDB id 1ndf Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.21 3.78 43.9 -0.46 -0.15 6.4 79 4 1 5 5 5 3 0  152 5001 A 2 1.12 1.42 31.4 0.31 0.11 9.6 86 3 1 2 5 2 0 0   3 1.35 2.19 52.3 -1.79 -0.34 22.1 67 1 3 2 2 2 0 0   4 1.31 1.59 36.9 -2.24 -0.75 27.7 72 3 2 1 0 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.