PDBsum entry 1ndb Go to PDB code:  Pore analysis for: 1ndb calculated with MOLE 2.0 PDB id 1ndb Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.29 2.49 48.3 0.93 0.43 3.5 80 2 0 4 9 7 2 1  MSE 339 B MSE 359 B MSE 547 B MSE 564 B 2 2.17 2.30 60.1 -1.18 -0.19 14.8 78 4 3 5 6 5 4 0  MSE 152 B 3 1.21 2.82 80.8 0.03 0.02 8.4 78 4 2 5 10 4 6 1  MSE 152 B MSE 339 B MSE 359 B MSE 564 B 4 1.16 2.23 60.0 1.10 0.55 4.4 78 2 0 4 12 8 2 1  MSE 339 A MSE 359 A MSE 547 A MSE 564 A 5 1.93 2.01 44.7 -2.45 -0.53 20.4 88 3 1 3 1 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.