spacer
spacer

PDBsum entry 1ncv
Go to PDB code: 
Top Page protein Protein-protein interface(s) links
Cytokine PDB id
1ncv
Contents
Protein chain
76 a.a. *
* Residue conservation analysis
procheck   Generate full PROCHECK analyses

PROCHECK summary for 1ncv

Ramachandran plot

PROCHECK statistics

1. Ramachandran Plot statistics


                                         No. of
                                        residues     %-tage
                                         ------      ------
Most favoured regions      [A,B,L]           64       46.4%** 
Additional allowed regions [a,b,l,p]         45       32.6%          
Generously allowed regions [~a,~b,~l,~p]      9        6.5%          
Disallowed regions         [XX]              20       14.5%** 
                                           ----      ------
Non-glycine and non-proline residues        138      100.0%

End-residues (excl. Gly and Pro)              2

Glycine residues                              2
Proline residues                             10
                                           ----
Total number of residues                    152

Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good quality model would be expected to have over 90% in the most favoured regions [A,B,L].

2. G-Factors

                                                Average
Parameter                            Score       Score
---------                            -----       -----
Dihedral angles:-
     Phi-psi distribution            -2.08**
     Chi1-chi2 distribution          -1.00*     
     Chi1 only                       -0.05      
     Chi3 & chi4                      0.33      
     Omega                            0.54      
                                                  -0.58*     
                                                  =====
Main-chain covalent forces:-
     Main-chain bond lengths         -2.39**
     Main-chain bond angles         -11.66**
                                                  -7.79**
                                                  =====

     OVERALL AVERAGE                              -2.94**
                                                  =====

G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is. 

Values below -0.5*  - unusual
Values below -1.0** - highly unusual
Important note: The main-chain bond-lengths and bond angles are compared with the Engh & Huber (1991) ideal values derived from small-molecule data. Therefore, structures refined using different restraints may show apparently large deviations from normality.

 

spacer
spacer