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PDBsum entry 1n4q

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Pore analysis for: 1n4q calculated with MOLE 2.0 PDB id
1n4q
Pores calculated on whole structure Pores calculated excluding ligands

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23 pores, coloured by radius 26 pores, coloured by radius 26 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.41 1.54 25.5 -2.40 -0.19 25.1 85 5 2 4 3 1 1 0  
2 1.46 2.64 33.8 -2.25 -0.15 25.3 75 7 1 2 1 3 0 0  MGM 1402 D
3 1.16 1.11 42.0 -0.46 -0.02 11.9 84 2 1 4 5 2 1 1  
4 1.49 2.64 55.0 -2.19 -0.12 25.8 70 8 2 1 2 5 0 0  MGM 1406 L
5 2.42 3.84 59.4 -1.76 -0.32 25.3 78 6 6 5 6 0 1 1  
6 1.36 1.47 62.2 -0.95 -0.08 16.4 82 5 2 3 5 3 1 0  
7 1.89 1.95 86.5 -2.76 -0.56 31.7 85 7 11 7 5 1 0 0  
8 1.19 2.17 109.4 -1.10 -0.07 17.2 79 8 9 7 9 6 1 1  
9 1.59 2.72 110.9 -2.62 -0.49 27.2 80 11 9 9 4 7 0 0  MGM 1406 L
10 2.43 2.67 123.4 -1.75 -0.35 26.6 78 10 10 5 5 1 2 2  
11 1.73 2.78 121.8 -2.20 -0.54 29.0 84 10 10 7 6 1 0 1  
12 1.32 1.47 141.3 -1.72 -0.41 24.0 86 11 13 10 8 3 1 1  
13 1.46 1.76 151.7 -2.35 -0.47 27.7 86 12 11 13 7 2 1 0  
14 1.66 2.38 172.9 -2.21 -0.40 24.5 81 20 14 13 9 4 1 0  MGM 1405 J
15 1.48 2.67 203.4 -2.01 -0.42 24.6 82 17 16 11 8 5 0 0  MGM 1405 J
16 1.95 1.97 245.0 -2.22 -0.55 27.7 84 19 21 16 9 2 1 0  
17 3.11 3.43 26.8 -1.17 -0.02 17.6 78 4 1 1 3 1 0 0  
18 1.48 1.78 31.8 -2.52 -0.25 27.7 83 6 4 4 2 1 1 0  
19 2.31 2.57 31.6 -2.80 -0.50 39.6 82 8 3 0 3 0 0 0  
20 1.46 2.66 32.1 -2.68 -0.07 30.7 67 8 2 1 0 5 0 1  MGM 1404 H
21 1.35 2.64 40.5 -2.60 -0.31 32.0 70 6 7 1 2 4 0 0  MGM 1401 B
22 1.35 2.64 46.8 -2.34 -0.18 26.4 71 8 4 3 1 5 0 1  MGM 1401 B
23 1.36 1.50 54.4 -0.02 0.20 12.7 80 8 2 3 10 4 0 1  
24 1.52 1.64 55.7 -0.68 -0.10 11.3 90 4 2 9 6 2 1 0  
25 1.52 1.78 27.6 -2.46 -0.27 27.9 80 5 5 2 3 1 1 0  
26 1.52 1.78 35.1 -2.27 -0.24 23.4 84 5 4 4 3 2 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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