PDBsum entry 1n4a

Tunnel analysis for: 1n4a calculated with

MOLE 2.0

PDB id

1n4a

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

0 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.24

1.57

25.4

-0.18

0.30

6.7

77

2

2

2

9

3

1

0

CNC 5501 B

2

1.25

1.54

25.7

-0.04

0.34

6.2

77

2

2

2

7

3

1

0

CNC 5501 B

3

1.29

1.79

27.4

-0.59

-0.05

5.9

71

1

1

4

9

4

2

0

4

1.28

1.65

27.6

-0.50

-0.03

5.9

71

1

1

4

9

4

2

0

5

1.25

1.57

36.1

-0.13

0.52

6.6

70

4

2

2

8

7

2

0

CNC 5501 B

6

1.23

1.54

36.3

-0.06

0.51

6.7

70

4

2

2

9

6

2

0

CNC 5501 B

7

1.26

1.50

39.9

-0.96

-0.21

14.7

71

1

5

2

8

4

2

0

CNC 501 A CNC 5501 B

8

1.26

1.50

40.2

-0.76

-0.13

13.6

71

1

5

2

9

4

2

0

CNC 501 A CNC 5501 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.