PDBsum entry 1mvc

Transcription

PDB id: 1mvc

Contents

Protein chains

212 a.a. *

11 a.a. *

Ligands

BM6

Waters ×190

* Residue conservation analysis

References listed in PDB file

Key reference

• Title: Molecular recognition of agonist ligands by rxrs.
• Authors: P.F.Egea, A.Mitschler, D.Moras.
• Ref.: Mol Endocrinol, 2002, 16, 987-997.
• PubMed id: 11981034

Abstract

The nuclear receptor RXR is an obligate partner in many signal transduction pathways. We report the high-resolution structures of two complexes of the human RXRalpha ligand-binding domain specifically bound to two different and chemically unrelated agonist compounds: docosa hexaenoic acid, a natural derivative of eicosanoic acid, present in mammalian cells and recently identified as a potential endogenous RXR ligand in the mouse brain, and the synthetic ligand BMS 649. In both structures the RXR-ligand-binding domain forms homodimers and exhibits the active conformation previously observed with 9-cis-RA. Analysis of the differences in ligand-protein contacts (predominantly van der Waals forces) and binding cavity geometries and volumes for the several agonist-bound RXR structures clarifies the structural features important for ligand recognition. The L-shaped ligand-binding pocket adapts to the diverse ligands, especially at the level of residue N306, which might thus constitute a new target for drug-design. Despite its highest affinity 9-cis-RA displays the lowest number of ligand-protein contacts. These structural results support the idea that docosa hexaenoic acid and related fatty acids could be natural agonists of RXRs and question the real nature of the endogenous ligand(s) in mammalian cells.