PDBsum entry 1msh Go to PDB code:  Tunnel analysis for: 1msh calculated with MOLE 2.0 PDB id 1msh Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.29 1.59 17.4 1.73 0.66 6.5 83 2 0 0 6 0 1 0   2 1.30 1.68 18.0 3.16 0.90 1.1 82 1 0 0 10 0 0 0   3 1.28 1.62 22.0 1.73 0.45 4.3 87 0 1 1 9 0 1 0   4 1.31 1.76 23.7 1.00 0.34 11.3 84 2 1 1 8 0 1 0   5 1.31 1.76 28.9 3.21 1.03 2.3 86 1 0 1 12 0 1 0   6 1.30 1.73 30.5 2.65 0.80 3.1 88 0 1 1 13 0 1 0   7 1.29 1.70 31.2 1.30 0.16 2.5 88 1 1 2 9 0 2 0   8 1.28 1.40 35.5 1.62 0.38 5.3 88 0 1 3 12 0 2 0   9 1.24 2.83 38.2 3.61 1.11 0.6 86 1 0 0 21 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.